{"frequencyBands":{"HP:0040280":[100,100],"HP:0040281":[80,99],"HP:0040282":[30,79],"HP:0040283":[5,29],"HP:0040284":[1,4],"HP:0040285":[0,0]},"page":{"columns":[{"gene":"","key":"MONDO:0008978/OMIM:215400","label":"Chordoma, susceptibility to","mondoId":"MONDO:0008978","onsetQualifier":null,"recordKeys":["e9327032749cdc665d6a27567187dd0a94e6300454d18bdf89444c0d8bea97df","f5503474bfd7b48d265c2014f736d105ced06afd1777485b05acfb02ca6972fa"],"recordQualifiers":{},"scopeLabel":"OMIM:215400","sourceIds":["OMIM:215400"],"sourceScope":"This column retains the native source entry. It is not a pooled estimate for the umbrella condition."}],"comparison":{"collapseColumnsLabel":"Show initial comparisons","defaultColumnKeys":["MONDO:0008978/OMIM:215400"],"expandColumnsLabel":"Compare all source entries","intro":"Compare the original source entries. Different entries may describe different patient groups.","primaryFeatureIds":[],"scopeNoteHtml":"<p>Each column keeps its native condition scope. Initial features are displayed alphabetically, not ranked by clinical importance. Counts remain separate, and an empty cell does not mean a feature cannot occur.</p>"},"coverage":{"countRecords":2,"emptyColumnKeys":[],"hpoRelease":"2026-06-23","narrativeSourceChanges":[],"records":2,"sourceGroups":{"omim":0,"orphanet":0,"published":2}},"features":[{"hpoId":"HP:0009592","label":"Astrocytoma","primary":false},{"hpoId":"HP:0010762","label":"Chordoma","primary":false}],"ledeHtml":"A chordoma is a rare type of cancerous tumor that can occur anywhere along the spine, from the base of the skull to the tailbone. Chordomas grow slowly, gradually extending into the bone and soft tissue around them. They often recur after treatment, and in about 40 percent of cases the cancer spreads (metastasizes) to other areas of the body, such as the lungs.","mondoId":"MONDO:0008978","records":[{"frequencyKind":"count","key":"e9327032749cdc665d6a27567187dd0a94e6300454d18bdf89444c0d8bea97df","raw":{"aspect":"P","body_system":"nervous_system","disease_id":"OMIM:215400","disease_name":"Chordoma, susceptibility to","evidence":"PCS","frequency_raw":"1/16","hpo_id":"HP:0009592","is_excluded":false,"label":"Astrocytoma","onset_id":null,"reference":"PMID:19801981","source_release":"2026-06-23"},"sourceGroups":["published"]},{"frequencyKind":"count","key":"f5503474bfd7b48d265c2014f736d105ced06afd1777485b05acfb02ca6972fa","raw":{"aspect":"P","body_system":"neoplasm","disease_id":"OMIM:215400","disease_name":"Chordoma, susceptibility to","evidence":"PCS","frequency_raw":"15/16","hpo_id":"HP:0010762","is_excluded":false,"label":"Chordoma","onset_id":null,"reference":"PMID:19801981","source_release":"2026-06-23"},"sourceGroups":["published"]}],"referenceLabels":{},"references":{"causeHtml":"<ul><li><a href=\"https://medlineplus.gov/genetics/condition/chordoma\">Chordoma</a></li></ul>","identityNote":"MONDO cross-references identify native condition entries. Ancestor membership does not transfer phenotype values between groups.","importantHtml":""},"sections":[{"bodyHtml":"<p>Changes in the TBXT gene have been associated with chordoma. An inherited duplication of the TBXT gene identified in a few families is associated with an increased risk of developing a chordoma. Duplications or increases in activity (expression) of the TBXT gene have also been identified in people with chordoma who have no history of the disorder in their family. In these individuals, the changes occur only in the tumor cells and are not inherited.</p><p>The TBXT gene provides instructions for making a protein called brachyury. Brachyury is a member of a protein family called T-box proteins, which play critical roles during embryonic development. T-box proteins regulate the activity of other genes by attaching (binding) to specific regions of DNA. On the basis of this action, T-box proteins are called transcription factors.</p><p>The brachyury protein is especially important for the early development of the spine. In human embryos, a structure called the notochord is the precursor of the spinal column. The notochord disappears before birth, but in a small percentage of individuals, some of its cells remain in the base of the skull or in the spine. In rare cases these cells begin to grow and divide uncontrollably, invading the nearby bone and soft tissue and resulting in the development of a chordoma.</p><p>Duplications and increases in expression of the TBXT gene both result in the production of excess brachyury protein. The specific mechanism by which excess brachyury protein contributes to the development of chordomas is unclear. Some people with chordoma do not have changes in the TBXT gene, and the cause of the disorder in these individuals is unknown.</p><p class=\"section-source\"><a href=\"https://medlineplus.gov/genetics/condition/chordoma/#causes\">MedlinePlus Genetics: Causes</a></p>","key":"forms","title":"What causes Chordoma?"},{"bodyHtml":"<p>Approximately half of all chordomas occur at the base of the spine (sacrum), about one third occur in the base of the skull (occiput), and the rest occur in the cervical (neck), thoracic (upper back), or lumbar (lower back) vertebrae of the spine. As the chordoma grows, it puts pressure on the adjacent areas of the brain or spinal cord, leading to the signs and symptoms of the disorder. A chordoma anywhere along the spine may cause pain, weakness, or numbness in the back, arms, or legs. A chordoma at the base of the skull (occipital chordoma) may lead to double vision (diplopia) and headaches. A chordoma that occurs in the tailbone (coccygeal chordoma) may result in a lump large enough to be felt through the skin and may cause problems with bladder or bowel function.</p><p>Chordomas typically occur in adults between ages 40 and 70. About 5 percent of chordomas are diagnosed in children. For reasons that are unclear, males are affected about twice as often as females.</p><p class=\"section-source\">Source: <a href=\"https://medlineplus.gov/genetics/condition/chordoma\">MedlinePlus Genetics</a></p>","key":"overview","title":"Condition overview"}],"sharedSources":[],"slug":"chordoma","sourceDocuments":[{"name":"Chordoma","reviewed":"2012-01","sections":{"causes":{"fetchedAt":"2026-10-20T20:20:15.930170+00:00","label":"Causes","pageSha256":"e2cfc7e4fa7dfabb89365ece299e42344e3d9cd632eaca9a9c18dae2601a473e","sourceUrl":"https://medlineplus.gov/genetics/condition/chordoma/#causes","status":"available"}},"source_release":"2026-10-01","url":"https://medlineplus.gov/genetics/condition/chordoma"}],"sourceNote":"MedlinePlus descriptions and Causes; original HPO annotations.","takeawayHtml":"Cause explanations are from MedlinePlus Genetics. Feature values below retain their original sources and patient groups.","title":"Chordoma"},"schemaVersion":1}